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  "Title": "Proportional Testing for Colocalisation Analysis",
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  "Description": "Colocalisation analysis tests whether two traits share a\ncausal genetic variant in a specified genomic region.\nProportional testing for colocalisation has been previously\nproposed [Wallace (2013) <doi:10.1002/gepi.21765>], but is\nreimplemented here to overcome barriers to its adoption. Its\nuse is complementary to the fine- mapping based colocalisation\nmethod in the 'coloc' package, and may be used in particular to\nidentify false \"H3\" conclusions in 'coloc'.",
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      "page": "adjust_LD",
      "title": "adjust LD for variable sample size",
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      "page": "estprop",
      "title": "Proportional colocalisation testing supplying only a pair of regression coefficients.",
      "topics": [
        "estprop"
      ]
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      "title": "Proportional colocalisation testing",
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      "title": "keep snp subset of coloc dataset",
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    {
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      "title": "create variance-covariance matrix for pair of marginal beta + vbeta, given estimate of r between snps",
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        "marg_with_V"
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    },
    {
      "page": "nform",
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        "nform"
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    {
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      "title": "run proportional tests on extreme subset of snp pairs from two coloc style datasets. Of all functions in this package, this is the main one that should be used.",
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        "run_proptests"
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    },
    {
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      "title": "Derive tag SNPs using heirarchical clustering",
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        "tag"
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    },
    {
      "page": "tester_marg",
      "title": "run proportional test directly on marginal test stats from coloc datasets",
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