Package: genomic.autocorr 1.0-1

genomic.autocorr: Models Dealing with Spatial Dependency in Genomic Data

Local structure in genomic data often induces dependence between observations taken at different genomic locations. Ignoring this dependence leads to underestimation of the standard error of parameter estimates. This package uses block bootstrapping to estimate asymptotically correct standard errors of parameters from any standard generalised linear model that may be fit by the glm() function.

Authors:Chris Wallace [aut, cre], Oliver Burren [aut]

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genomic.autocorr.pdf |genomic.autocorr.html
genomic.autocorr/json (API)

# Install 'genomic.autocorr' in R:
install.packages('genomic.autocorr', repos = c('https://chr1swallace.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/chr1swallace/genomic.autocorr/issues

On CRAN:

Conda-Forge:

2.70 score 4 scripts 219 downloads 2 exports 5 dependencies

Last updated 7 years agofrom:764dcfe4b1. Checks:1 OK, 7 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 22 2025
R-4.5-winWARNINGFeb 22 2025
R-4.5-macWARNINGFeb 22 2025
R-4.5-linuxWARNINGFeb 22 2025
R-4.4-winWARNINGFeb 22 2025
R-4.4-macWARNINGFeb 22 2025
R-4.3-winWARNINGFeb 22 2025
R-4.3-macWARNINGFeb 22 2025

Exports:acf.summaryblock.glm

Dependencies:data.tablemagrittrplyrRcppreshape