Create some example data | Analysis with proportional coloc | Differences between fine-mapping and proportional coloc | Low power | LD
Package: colocPropTest 0.9.3
colocPropTest: Proportional Testing for Colocalisation Analysis
Colocalisation analysis tests whether two traits share a causal genetic variant in a specified genomic region. Proportional testing for colocalisation has been previously proposed [Wallace (2013) <doi:10.1002/gepi.21765>], but is reimplemented here to overcome barriers to its adoption. Its use is complementary to the fine- mapping based colocalisation method in the 'coloc' package, and may be used in particular to identify false "H3" conclusions in 'coloc'.
Authors:
colocPropTest_0.9.3.tar.gz
colocPropTest_0.9.3.zip(r-4.7)colocPropTest_0.9.3.zip(r-4.6)colocPropTest_0.9.3.zip(r-4.5)
colocPropTest_0.9.3.tgz(r-4.6-any)colocPropTest_0.9.3.tgz(r-4.5-any)
colocPropTest_0.9.3.tar.gz(r-4.7-any)colocPropTest_0.9.3.tar.gz(r-4.6-any)
colocPropTest_0.9.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
colocPropTest/json (API)
| # Install 'colocPropTest' in R: |
| install.packages('colocPropTest', repos = c('https://chr1swallace.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/chr1swallace/colocproptest/issues
Last updated from:f8dfc43d8b. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 176 | ||
| source / vignettes | OK | 199 | ||
| linux-release-x86_64 | OK | 169 | ||
| macos-release-arm64 | OK | 191 | ||
| macos-oldrel-arm64 | OK | 157 | ||
| windows-devel | OK | 150 | ||
| windows-release | OK | 139 | ||
| windows-oldrel | OK | 115 | ||
| wasm-release | OK | 118 |
Exports:adjust_LDestproplpplot_ellipsesrun_propteststag
Dependencies:abindbackportsbootbroomcarcarDataclicoloccolorspacecowplotcpp11crayondata.tableDerivdoBydplyrfarverforecastFormulafracdiffgenericsggplot2gluegridExtragtableirlbaisobandlabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmatrixStatsmgcvmicrobenchmarkminqamixsqpmodelrnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplyrpurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasreshaperlangS7scalesSparseMstringistringrsurvivalsusieRtibbletidyrtidyselecttimeDateurcautf8vctrsviridisviridisLitewithrzoo
